#Install anaconda for mac docs.contiuum install#
#Install anaconda for mac docs.contiuum download#

Installing CaImAn from a package on Windows should be otherwise the same as any other OS for the The Windows memmap interface is sensitive to the maximum settingĪnd leaving it at the default can cause errors when processing larger Increase the maximum size of your pagefile to 64G or more Remove any associations you may have made between. Rather than from Powershell or any other shell. In either case,Įverything you do should be from a Conda enabled shell (which you can find in your programs menu)

#Install anaconda for mac docs.contiuum install#

Using the package-based install rather than building CaImAn yourself. On Linux or MacOSX and has different issues you may run into. The Windows installation process differs more widely from installation

Installation on Windows ¶ Installation on Windows To contribute to the CaImAn project, fix bugs etc. This will allow you to modify the source files of CaImAn and will make it easier With setting up the caiman_data folder as explained below. (or remove) the caiman directory that contains the source of the repo and the caiman_data folder and then proceed You might encounter some errors with Python reading the files from the wrong directory. If you are on Windows, have used CaImAn before using our github repo and now want to use the conda-forge package, Skip ahead to the section on setting up a data directory with caimanmanager Mamba create -n caiman -c conda-forge caiman If you are installing on Windows, use the conda enabled shell (under “Anaconda” in your programs menu) rather than powershell or a generic prompt Install mamba into your base environment, with ‘conda install -n base -c conda-forge mamba’Ĭreate a new environment with the caiman package from conda-forge: This route also sets environment variables for you (skip that section below)ĭownload and install Anaconda (Python 3.x)

#Install anaconda for mac docs.contiuum download#

You should not download the sources (with git or otherwise) for this route. You do not need a compiler for this route. This process is the same on every operating systemįollow this process if you won’t need to work with the CaImAn sourcesĪnd instead wish to use it as a library (the demos still work this way, and Package-based Process ¶ Conda installer instructions A package based installation and a development Setting up the caimanmanager which will setup a directory with all the demos, test datasets etc. Download and install Anaconda or Miniconda (Python 3.x version)ĬaImAn installation consists of two steps: